| Name | Round | Team | Year | ||
|---|---|---|---|---|---|
| 1 | RHP | Chase Hentges | 14th Round | Kansas City Royals | 2008 |
| 2 | INF | Dusty Coleman | 28th Round | Oakland Athletics | 2008 |
| 3 | C/OF | Sam Ryan | 33rd Round | Minnesota Twins | 2008 |
| 4 | INF | Kash Kolkowski | 49th Round | Tampa Bay Rays | 2008 |
| 5 | OF | Joe Loftus | 45th Round / 28th Round | Twins / Diamondbacks | 2008 / 2011 |
| 6 | RHP | Ryan Hander | 39th Round | LA Dodgers | 2009 |
| 7 | LHP | Logan Ehlers | 8th Round | Toronto Blue Jays | 2010 |
| 8 | LHP | Ryan Bollinger | 47th Round | Philadelphia Phillies | 2010 |
| 9 | LHP | Mike Strong | 25th Round / 10th Round | White Sox / Brewers | 2010 / 2011 |
| 10 | INF | Taylor Zuetenhorste | 38th Round / 41st Round | Mariners / Phillies | 2010 / 2014 |
| 11 | RHP | Madison Boer | 2nd Round | Minnesota Twins | 2011 |
| 12 | OF | Justin Gominsky | 11th Round | Houston Astros | 2011 |
| 13 | RHP | Jake Esch | 11th Round | Florida Marlins | 2011 |
| 14 | LHP/OF/1B | Robert Youngdahl | 37th Round | Boston Red Sox | 2011 |
| 15 | RHP | David Ernst | 47th Round / FA | Chicago Cubs / Fargo-Morehead Redhawks | 2011 / 2015 |
| 16 | INF | Max Casper | Free Agent | Sioux Falls Canaries | 2012 |
| 17 | OF | Ryan Boldt | 22nd Round / 2nd Round | Red Sox / Rays | 2013 / 2016 |
| 18 | RHP | Logan Shore | 29th Round / 2nd Round | Twins / Athletics | 2013 / 2016 |
| 19 | LHP | Sam Hentges | 4th Round | Cleveland Indians | 2014 |
| 20 | OF | Max Murphy | 9th Round | Minnesota Twins | 2014 |
| 21 | RHP | Paul Voelker | 10th Round | Detroit Tigers | 2014 |
| 22 | INF | Pat Kelly | 12th Round | Minnesota Twins | 2014 |
| 23 | RHP | Jason Hoppe | 27th Round | Texas Rangers | 2014 |
| 24 | C/3B | Brad Mathiowetz | 35th Round | Minnesota Twins | 2014 |
| 25 | RHP | Andy Johnson | Free Agent | St. Paul Saints | 2014 |
| 26 | RHP | Mike Baumann | 34th Round / 3rd Round | Twins / Orioles | 2014 / 2017 |
| 27 | RHP | Travis Neubeck | 7th Round | Miami Marlins | 2015 |
| 28 | OF | Logan Landon | 10th Round | LA Dodgers | 2015 |
| 29 | OF | Kris Goodman | 32nd Round | Miami Marlins | 2015 |
| 30 | RHP | Andrew Thome | Free Agent | Houston Astros | 2015 |
| 31 | LHP | Dalton Sawyer | 27th Round / 9th Round | Twins / A's | 2015 / 2016 |
| 32 | RHP | Jordan Risse | Free Agent | Sioux City Explorers | 2016 |
| 33 | C | Aaron Gretz | Free Agent | St. Paul Saints | 2016 |
| 34 | OF | Alex Call | 3rd Round | Chicago White Sox | 2016 |
| 35 | OF/C | Matt Fiedler | 9th Round | St. Louis Cardinals | 2016 |
| 36 | LHP | Zach Muckenhirn | 11th Round | Baltimore Orioles | 2016 |
| 37 | LHP | Max Knutson | 12th Round | Baltimore Orioles | 2016 |
| 38 | SS | Tyler Wolfe | 39th Round | Houston Astros | 2016 |
| 39 | RHP | Jake Matthys | Free Agent | Gary Railcats | 2017 |
| 40 | RHP | Sam Carlson | 2nd Round | Seattle Mariners | 2017 |
| 41 | RHP | Dominic Reed | Free Agent | Traverse City | 2017 |
| 42 | OF | Jacob Rhinesmith | 18th Round | Washington Nationals | 2018 |
| 43 | LHP | Khellen Rholl | 25th Round | Cleveland Indians | 2018 |
| 44 | RHP | Seth Halvorsen | 30th Round/7th Round | Minnesota Twins/Colorado Rockies | 2018 / 2023 |
| 45 | RHP | Aidan Maldonado | 38th Round | Milwaukee Brewers | 2018 |
| 46 | LHP | Aaron Rozek | Free Agent | Southern Illinois Miners | 2018 |
| 47 | C | Connor Olson | Free Agent | St. Paul Saints | 2018 |
| 48 | 2B | Michael Busch | 1st Round | LA Dodgers | 2019 |
| 49 | 2B | Isaac Collins | 9th Round | Colorado Rockies | 2019 |
| 50 | RHP | Jake Stevenson | 10th Round | Cincinnati Reds | 2019 |
| 51 | RHP | Louie Varland | 15th Round | Minnesota Twins | 2019 |
| 52 | LHP | Drew Gilbert | 35th Round | Minnesota Twins | 2019 |
| 53 | RHP | Will Frisch | 36th Round | Minnesota Twins | 2019 |
| 54 | RHP | Ben Pederson | 38th Round | Baltimore Orioles | 2019 |
| 55 | RHP | Ryan Froom | Free Agent | Sioux Falls Canaries | 2019 |
| 56 | RHP | Mason McMahon | Free Agent | St. Paul Saints | 2019 |
| 57 | LHP | George Faue | Free Agent | Sioux Falls Canaries | 2019 |
| 58 | LHP | Aaron Rozek | Free Agent | Minnesota Twins | 2021 |
| 59 | SS | Nick Novak | Free Agent | Fargo-Moorhead Redhawks | 2021 |
| 60 | RHP | Christian Johnson | Free Agent | Sioux Falls Canaries | 2022 |
| 61 | OF | Drew Gilbert | 1st Round | Houston Astros | 2022 |
| 62 | RHP | Will Frisch | 6th Round | Chicago Cubs | 2022 |
| 63 | RHP | Aidan Maldonado | 14th Round | Milwaukee Brewers | 2022 |
| 64 | LHP | Ryan Duffy | Free Agent | Fargo-Moorhead Redhawks | 2022 |
| 65 | RHP | Max Carlson | 12th Round | Boston Red Sox | 2023 |
| 66 | RHP | Isaac Morton | 19th Round | Milwaukee Brewers | 2023 |
